Enclaves of genetic diversity resisted Inca impacts on population history

Chiara Barbieri, José R. Sandoval, Jairo Valqui, Aviva Shimelman, Stefan Ziemendorff, Roland Schröder, Maria Geppert, Lutz Roewer, Russell Gray, Mark Stoneking, Ricardo Fujita, Paul Heggarty

Research output: Contribution to journalArticlepeer-review

25 Scopus citations


The Inca Empire is claimed to have driven massive population movements in western South America, and to have spread Quechua, the most widely-spoken language family of the indigenous Americas. A test-case is the Chachapoyas region of northern Peru, reported as a focal point of Inca population displacements. Chachapoyas also spans the environmental, cultural and demographic divides between Amazonia and the Andes, and stands along the lowest-Altitude corridor from the rainforest to the Pacific coast. Following a sampling strategy informed by linguistic data, we collected 119 samples, analysed for full mtDNA genomes and Y-chromosome STRs. We report a high indigenous component, which stands apart from the network of intense genetic exchange in the core central zone of Andean civilization, and is also distinct from neighbouring populations. This unique genetic profile challenges the routine assumption of large-scale population relocations by the Incas. Furthermore, speakers of Chachapoyas Quechua are found to share no particular genetic similarity or gene-flow with Quechua speakers elsewhere, suggesting that here the language spread primarily by cultural diffusion, not migration. Our results demonstrate how population genetics, when fully guided by the archaeological, historical and linguistic records, can inform multiple disciplines within anthropology.

Original languageEnglish
Article number17411
JournalScientific Reports
Issue number1
StatePublished - 1 Dec 2017
Externally publishedYes

Bibliographical note

Funding Information:
We are grateful to all volunteer participants, and to all those who supported our research in the provinces of Chachapoyas, Luya and Lamas. In particular, we wish to thank Napoleon Culqui, Antenor Chuquizuta and Segundo Felipe Cachique Amasifuen for their insights into the linguistic and historical background of their home regions. We thank Pierina Danos and Anna Paschall for their assistance with sample preparation and DNA extraction, and Fabrizio Mafessoni for support in bash scripting. We finally thank Bernard Comrie for supporting the genetic and linguistic fieldwork with funds from the Max Planck Society.

Publisher Copyright:
© 2017 The Author(s).


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