Abstract
Original language | American English |
---|---|
Journal | Scientific Reports |
DOIs | |
State | Published - 9 Oct 2015 |
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Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. / Henderson, Gemma; Cox, Faith; Ganesh, Siva; Jonker, Arjan; Young, Wayne; Janssen, Peter H.; Abecia, Leticia; Angarita, Erika; Aravena, Paula; Arenas, Graciela Nora; Ariza, Claudia; Attwood, Graeme T.; Avila, Jose Mauricio; Avila-Stagno, Jorge; Bannink, André; Barahona, Rolando; Batistotti, Mariano; Bertelsen, Mads F.; Brown-Kav, Aya; Carvajal, Andres M.; Cersosimo, Laura; Chaves, Alexandre Vieira; Church, John; Clipson, Nicholas; Cobos-Peralta, Mario A.; Cookson, Adrian L.; Cravero, Silvio; Carballo, Omar Cristobal; Crosley, Katie; Cruz, Gustavo; Cucchi, María Cerón; De La Barra, Rodrigo; De Menezes, Alexandre B.; Detmann, Edenio; Dieho, Kasper; Dijkstra, Jan; Dos Reis, William L.S.; Dugan, Mike E.R.; Ebrahimi, Seyed Hadi; Eythórsdóttir, Emma; Fon, Fabian Nde; Fraga, Martín; Franco, Francisco; Friedeman, Chris; Fukuma, Naoki; Gagić, Dragana; Gangnat, Isabelle; Grilli, Diego Javier; Guan, Le Luo; Miri, Vahideh Heidarian; Hernandez-Sanabria, Emma; Gomez, Alma Ximena Ibarra; Isah, Olubukola A.; Ishaq, Suzanne; Jami, Elie; Jelincic, Juan; Kantanen, Juha; Kelly, William J.; Kim, Seon Ho; Klieve, Athol; Kobayashi, Yasuo; Koike, Satoshi; Kopecny, Jan; Kristensen, Torsten Nygaard; Krizsan, Sophie Julie; LaChance, Hannah; Lachman, Medora; Lamberson, William R.; Lambie, Suzanne; Lassen, Jan; Leahy, Sinead C.; Lee, Sang Suk; Leiber, Florian; Lewis, Eva; Lin, Bo; Lira, Raúl; Lund, Peter; Macipe, Edgar; Mamuad, Lovelia L.; Mantovani, Hilário Cuquetto; Marcoppido, Gisela Ariana; Márquez, Cristian; Martin, Cécile; Martinez, Gonzalo; Martinez, Maria Eugenia; Mayorga, Olga Lucía; McAllister, Tim A.; McSweeney, Chris; Mestre, Lorena; Minnee, Elena; Mitsumori, Makoto; Mizrahi, Itzhak; Molina, Isabel; Muenger, Andreas; Munoz, Camila; Murovec, Bostjan; Newbold, John; Nsereko, Victor; O'Donovan, Michael; Okunade, Sunday; O'Neill, Brendan; Ospina, Sonia; Ouwerkerk, Diane; Parra, Diana; Pereira, Luiz Gustavo Ribeiro; Pinares-Patino, Cesar; Pope, Phil B.; Poulsen, Morten; Rodehutscord, Markus; Rodriguez, Tatiana; Saito, Kunihiko; Sales, Francisco; Sauer, Catherine; Shingfield, Kevin; Shoji, Noriaki; Simunek, Jiri; Stojanović-Radić, Zorica; Stres, Blaz; Sun, Xuezhao; Swartz, Jeffery; Tan, Zhi Liang; Tapio, Ilma; Taxis, Tasia M.; Tomkins, Nigel; Ungerfeld, Emilio; Valizadeh, Reza; Van Adrichem, Peter; Van Hamme, Jonathan; Van Hoven, Woulter; Waghorn, Garry; Wallace, R. John; Wang, Min; Waters, Sinéad M.; Keogh, Kate; Witzig, Maren; Wright, Andre Denis G.; Yamano, Hidehisa; Yan, Tianhai; Yanez-Ruiz, David R.; Yeoman, Carl J.; Zambrano, Ricardo; Zeitz, Johanna; Zhou, Mi; Zhou, Hua Wei; Zou, Cai Xia; Zunino, Pablo.
In: Scientific Reports, 09.10.2015.Research output: Contribution to journal › Article › peer-review
TY - JOUR
T1 - Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
AU - Henderson, Gemma
AU - Cox, Faith
AU - Ganesh, Siva
AU - Jonker, Arjan
AU - Young, Wayne
AU - Janssen, Peter H.
AU - Abecia, Leticia
AU - Angarita, Erika
AU - Aravena, Paula
AU - Arenas, Graciela Nora
AU - Ariza, Claudia
AU - Attwood, Graeme T.
AU - Avila, Jose Mauricio
AU - Avila-Stagno, Jorge
AU - Bannink, André
AU - Barahona, Rolando
AU - Batistotti, Mariano
AU - Bertelsen, Mads F.
AU - Brown-Kav, Aya
AU - Carvajal, Andres M.
AU - Cersosimo, Laura
AU - Chaves, Alexandre Vieira
AU - Church, John
AU - Clipson, Nicholas
AU - Cobos-Peralta, Mario A.
AU - Cookson, Adrian L.
AU - Cravero, Silvio
AU - Carballo, Omar Cristobal
AU - Crosley, Katie
AU - Cruz, Gustavo
AU - Cucchi, María Cerón
AU - De La Barra, Rodrigo
AU - De Menezes, Alexandre B.
AU - Detmann, Edenio
AU - Dieho, Kasper
AU - Dijkstra, Jan
AU - Dos Reis, William L.S.
AU - Dugan, Mike E.R.
AU - Ebrahimi, Seyed Hadi
AU - Eythórsdóttir, Emma
AU - Fon, Fabian Nde
AU - Fraga, Martín
AU - Franco, Francisco
AU - Friedeman, Chris
AU - Fukuma, Naoki
AU - Gagić, Dragana
AU - Gangnat, Isabelle
AU - Grilli, Diego Javier
AU - Guan, Le Luo
AU - Miri, Vahideh Heidarian
AU - Hernandez-Sanabria, Emma
AU - Gomez, Alma Ximena Ibarra
AU - Isah, Olubukola A.
AU - Ishaq, Suzanne
AU - Jami, Elie
AU - Jelincic, Juan
AU - Kantanen, Juha
AU - Kelly, William J.
AU - Kim, Seon Ho
AU - Klieve, Athol
AU - Kobayashi, Yasuo
AU - Koike, Satoshi
AU - Kopecny, Jan
AU - Kristensen, Torsten Nygaard
AU - Krizsan, Sophie Julie
AU - LaChance, Hannah
AU - Lachman, Medora
AU - Lamberson, William R.
AU - Lambie, Suzanne
AU - Lassen, Jan
AU - Leahy, Sinead C.
AU - Lee, Sang Suk
AU - Leiber, Florian
AU - Lewis, Eva
AU - Lin, Bo
AU - Lira, Raúl
AU - Lund, Peter
AU - Macipe, Edgar
AU - Mamuad, Lovelia L.
AU - Mantovani, Hilário Cuquetto
AU - Marcoppido, Gisela Ariana
AU - Márquez, Cristian
AU - Martin, Cécile
AU - Martinez, Gonzalo
AU - Martinez, Maria Eugenia
AU - Mayorga, Olga Lucía
AU - McAllister, Tim A.
AU - McSweeney, Chris
AU - Mestre, Lorena
AU - Minnee, Elena
AU - Mitsumori, Makoto
AU - Mizrahi, Itzhak
AU - Molina, Isabel
AU - Muenger, Andreas
AU - Munoz, Camila
AU - Murovec, Bostjan
AU - Newbold, John
AU - Nsereko, Victor
AU - O'Donovan, Michael
AU - Okunade, Sunday
AU - O'Neill, Brendan
AU - Ospina, Sonia
AU - Ouwerkerk, Diane
AU - Parra, Diana
AU - Pereira, Luiz Gustavo Ribeiro
AU - Pinares-Patino, Cesar
AU - Pope, Phil B.
AU - Poulsen, Morten
AU - Rodehutscord, Markus
AU - Rodriguez, Tatiana
AU - Saito, Kunihiko
AU - Sales, Francisco
AU - Sauer, Catherine
AU - Shingfield, Kevin
AU - Shoji, Noriaki
AU - Simunek, Jiri
AU - Stojanović-Radić, Zorica
AU - Stres, Blaz
AU - Sun, Xuezhao
AU - Swartz, Jeffery
AU - Tan, Zhi Liang
AU - Tapio, Ilma
AU - Taxis, Tasia M.
AU - Tomkins, Nigel
AU - Ungerfeld, Emilio
AU - Valizadeh, Reza
AU - Van Adrichem, Peter
AU - Van Hamme, Jonathan
AU - Van Hoven, Woulter
AU - Waghorn, Garry
AU - Wallace, R. John
AU - Wang, Min
AU - Waters, Sinéad M.
AU - Keogh, Kate
AU - Witzig, Maren
AU - Wright, Andre Denis G.
AU - Yamano, Hidehisa
AU - Yan, Tianhai
AU - Yanez-Ruiz, David R.
AU - Yeoman, Carl J.
AU - Zambrano, Ricardo
AU - Zeitz, Johanna
AU - Zhou, Mi
AU - Zhou, Hua Wei
AU - Zou, Cai Xia
AU - Zunino, Pablo
PY - 2015/10/9
Y1 - 2015/10/9
N2 - © 2015 Macmillan Publishers Limited. Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific.
AB - © 2015 Macmillan Publishers Limited. Ruminant livestock are important sources of human food and global greenhouse gas emissions. Feed degradation and methane formation by ruminants rely on metabolic interactions between rumen microbes and affect ruminant productivity. Rumen and camelid foregut microbial community composition was determined in 742 samples from 32 animal species and 35 countries, to estimate if this was influenced by diet, host species, or geography. Similar bacteria and archaea dominated in nearly all samples, while protozoal communities were more variable. The dominant bacteria are poorly characterised, but the methanogenic archaea are better known and highly conserved across the world. This universality and limited diversity could make it possible to mitigate methane emissions by developing strategies that target the few dominant methanogens. Differences in microbial community compositions were predominantly attributable to diet, with the host being less influential. There were few strong co-occurrence patterns between microbes, suggesting that major metabolic interactions are non-selective rather than specific.
UR - https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84943655505&origin=inward
UR - https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=84943655505&origin=inward
U2 - 10.1038/srep14567
DO - 10.1038/srep14567
M3 - Article
JO - Scientific Reports
JF - Scientific Reports
SN - 2045-2322
ER -